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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
About me
About me
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Posts
Onsager reprocity and fluctuation-dissipation-theorem
Published:
This blog post is the notes on the relation (or difference) between Onsager reciprocity and fluctuation-dissipation-theorem.
Modeling bacteria cells with curvature
Published:
This post records the details of the agent-based model of curved bacteria cells.
Hybrid MPI and OpenMP C++ toy problem on Slurm-based HPC
Published:
This post shares a toy parallel C++ using hybrid MPI and OpenMP, and the deploying processes on a Slurm-based HPC.
Governing equations in LAMMPS ensembles
Published:
This post elaborates the governing equations for different ensemble time integration methods in LAMMPS.
Compile and run MOOSE on HPC
Published:
This post is a note on installing and running the finite element framework MOOSE on HPC.
MPI Introduction
Published:
This post is my note on MPI coding.
Compile VASP on Apple M1 Max CPU
Published:
This post records the compilation of VASP on my laptop.
Coding custom LAMMPS fix command
Published:
This post is a note on coding custom fix command in LAMMPS.
Configure my iTerm2 terminal on MacOS
Published:
This post is a note on configuring the iTerm2 terminal on my new laptop.
Three different types of linear second order PDEs
Published:
This post is a note on the characteristics of the elliptic, hyperbolic, and parabolic PDEs.
Physical and mathematical derivation of the speed of sound
Published:
This post is a note on the two methods for deriving the speed of sound.
Poisson-Nernst-Planck-system
Published:
This post is a brief introduction to Poisson-Nernst-Planck equations.
FEniCS studying notes
Published:
This note records my study route of FEniCS, an open-source finite element library.
Two-phase membrane diffusive interface model
Published:
This is the development log for a project I was recently working on.
Notes on scientific writing
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This post contains some cherry-picked information for writing scientific papers.
My LeetCode summary
Published:
This post is a summary of my short journey in LeetCode.
C++ vector
Published:
This is a quick note for the Vector implemented in C++ STL library.
Backtracking and dynamic programming - some random thinking from the permutation problem
Published:
This is a quick note recording my coding practice.
portfolio
Biofilms as self-shaping growing nematics (Nature Physics)
We combine state-of-art single cell imaging, continuum mechanics, and agent-based modeling to systematically investigate the growth dynamics of 3D biofilms. 
Machine learning traction force maps of cell monolayers (Extreme Mechanics Letters)
We developed a machine learning model to predict traction force maps for contractile cell monolayers. 
Mechano-lithography: stress anisotropy driven nematic order in growing three-dimensional bacterial biofilms (Soft Matter)
We throughly discussed the stress-driven order mechanism in 3D biofilms. 
Mechanical forces drive a reorientation cascade leading to biofilm self-patterning (Nature Communications)
We combine agent-based simulations and a minimal two-phase active nematics hydrodynamics model to elaborate the self-patterning mechanism for 2D biofilm layers. 
Molecular Ferroelectric-Based Flexible Sensors Exhibiting Supersensitivity and Multimodal Capability for Detection (Advanced Materials)
We proposed a ultra-sensitive mechanical sensor based on molecular ferroelectrics. Nonlinear FEA and theory for porous materials gave a simple scaling relation for sensor design. 
Highly stretchable polymer composite with strain‐enhanced electromagnetic interference shielding effectiveness (Advanced Materials)
We proposed a liquid-metal and polymer-based composite with good mechanical and electromagnetic performance. 
Physical forces guide curvature sensing and cell migration mode bifurcating (PNAS Nexus)
We developed a minimal model showing the positive feedback loop for mammalian cells sensing and guided by curvature. 
publications
Paper Title Number 2
Published in Journal 1, 2010
This paper is about the number 2. The number 3 is left for future work.
Recommended citation: Your Name, You. (2010). "Paper Title Number 2." Journal 1. 1(2). http://academicpages.github.io/files/paper2.pdf
Paper Title Number 3
Published in Journal 1, 2015
This paper is about the number 3. The number 4 is left for future work.
Recommended citation: Your Name, You. (2015). "Paper Title Number 3." Journal 1. 1(3). http://academicpages.github.io/files/paper3.pdf
Mechano-lithography: stress anisotropy driven nematic order in growing three-dimensional bacterial biofilms
Published in Arxiv, 2022
Recommended citation: Your Name, You. (2009). "Paper Title Number 1." Journal 1. 1(1). http://academicpages.github.io/files/paper1.pdf
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.